BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB019D11SP1|AL427487
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig151 625 e-179
3x_Contig1155 591 e-169
>3x_Contig151
Length = 1033
Score = 625 bits (314), Expect = e-179
Identities = 329/334 (98%), Gaps = 1/334 (0%)
Strand = Plus / Minus
Query: 1 cacttttgcaaagtcttctctgwtgtaaaaaacatctaagggtattagtgattgcttagc 60
|||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||
Sbjct: 334 cacttttgcaaagtcttctctgttgtagaaagcatctaagggtattagtgattgcttagc 275
Query: 61 agcaagcaaacctgcccaagactttgaaactgtagaaccaaggggcgtgtaggccccaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 agcaagcaaacctgcccaagactttgaaactgtagaaccaaggggcgtgtaggccccaag 215
Query: 121 accagtgacaactacacgtttgagactcatgggtgaggatgatatagtgtatgcttaaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 accagtgacaactacacgtttgagactcatgggtgaggatgatatagtgtatgcttaaca 155
Query: 181 gccaacccccggtttctgtttcttttgtcagtttaatctgatggcctgtttaaacagtaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 gccaacccccggtttctgtttcttttgtcagtttaatctgatggcctgtttaaacagtaa 95
Query: 241 cacttt-ttttttttagattctctccgatttcaacagtacaagggaataatagttacata 299
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 cacttttttttttttagattctctccgatttcaacagtacaagggaataatagttacata 35
Query: 300 ttgatatgaagcgaaggcaagawatgaaaacatt 333
|||||||||||||||||||||| |||||||||||
Sbjct: 34 ttgatatgaagcgaaggcaagatatgaaaacatt 1
>3x_Contig1155
Length = 6106
Score = 591 bits (297), Expect = e-169
Identities = 310/315 (98%), Gaps = 1/315 (0%)
Strand = Plus / Minus
Query: 606 tcattgcctgtagagattatcaatcactgttcttttattccaacatcacatcaactccta 665
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 6106 tcattgcctgtagagattatcaatcactgt-cttttattccaacatcacatcaactccta 6048
Query: 666 atawacaaaanggattgagaactgcggttctacgaaaattaccattcaagtagatcatcc 725
||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 6047 atatacaaaatggattgagaactgcggttctacganaattaccattcaagtagatcatcc 5988
Query: 726 ttggcatataagtattcgtcaaagatgaattcaacttcatcggtttcagggtggtaggca 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5987 ttggcatataagtattcgtcaaagatgaattcaacttcatcggtttcagggtggtaggca 5928
Query: 786 gcaactctcaacttggtgtggtccttgatgacgatatcgcaacccttttcgatcaagaat 845
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5927 gcaactctcaacttggtgtggtccttgatgacgatatcgcaacccttttcgatcaagaat 5868
Query: 846 tccttgtcgaaagtagtggcaataccaacgatcttacagccagcagctttaccggscaag 905
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 5867 tccttgtcgaaagtagtggcaataccaacgatcttacagccagcagctttaccggccaag 5808
Query: 906 atacctgctggagca 920
|||||||||||||||
Sbjct: 5807 atacctgctggagca 5793
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,006
Number of Sequences: 1807
Number of extensions: 12006
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 2
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.4 bits)
S2: 50 (100.0 bits)